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Specimen
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PCR University of New Haven
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PCR Australian Biologics
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Sequencing
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1
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Whole callus
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pyrG, fla, ospC
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16S rRNA
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pyrG, fla, ospC
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2
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Whole callus
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pyrG, fla, 16S rRNA
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16S rRNA
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pyrG
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3
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Whole callus
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fla, pyrG, 16S rRNA, uvrA, ospC
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16S rRNA
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16S RNA, pyrG, fla, uvrA, ospC
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3
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Blood culture
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fla
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4
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Callus section
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16S rRNA
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4
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Blood culture
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fla
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5
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Whole callus
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pyrG
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16S rRNA
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pyrG
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6
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Skin culture
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16S rRNA
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7
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Blood culture
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fla
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8
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Whole callus
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pyrG, 16S rRNA, fla
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pyrG, fla,
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8
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Blood culture
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fla, pyrG
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fla
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9
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Skin culture
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fla
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fla
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10
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Whole callus
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16S rRNA, pyrG, fla
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16S rRNA
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16S rRNA, pyrG
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10
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Intestinal specimen
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16S rRNA
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11
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Whole callus
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fla+/- indeterminate
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Inhibited
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13
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Whole callus
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uvrA
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uvrA
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13
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Blood culture
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pyrG
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16S rRNA
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13
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Skin culture
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pyrG
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14
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Blood culture
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fla
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16S rRNA
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fla
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14
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Vaginal culture
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fla
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16S rRNA
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fla
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15
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Whole callus
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16S rRNA
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16
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Whole callus
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rpoC
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rpoC
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17
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Whole callus
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pyrG, uvrA
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16S rRNA
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pyrG, uvrA
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17
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Blood culture
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Real-time 16S rRNA +/- equivocal
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18
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Whole callus
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fla
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16S rRNA
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fla
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21
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Skin culture
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16S rRNA +/- equivocal
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23
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Whole callus
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16S rRNA
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rpoC*
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24
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Blood culture
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fla
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16S rRNA
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24
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Vaginal culture
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16S rRNA
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rpoC**
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- *Sequence consistent with B. miyamotoi.
- **Sequence consistent with B. garinii.
- Amplicon sequences from all patients were consistent with Bb sensu stricto except for sequence from patient 23, which was consistent with B. miyamotoi, and patient 24, which was consistent with B. garinii.